Structural Bioinformatics Group

Publications of AG Preissner

Editorial responsibility by Robert Preissner.
The open access documents can be downloaded as pdf files for personal academic use.
Please contact us for accessing further fulltext-publications.
Anyone wishing to use it for commercial purposes or needing to make multiple copies must contact the publisher.

2024

Exogenous Estrogen in the Development of Head and Neck Cancer

In JAMA Otolaryngol Head Neck Surg. Volume 150(5), May
.

Rosacea is strongly associated with melanoma in Caucasians

In Sci Rep. Volume 14, May
.

ProTox 3.0: a webserver for the prediction of toxicity of chemicals

In Nucleic Acids Res., Apr
.

Association of Herpes simplex infection with significantly increased risk of head and neck cancer: real-world evidence of about 500,000 patients

In Int J Dermatol., Apr
.

Non-animal models for blood-brain barrier permeability evaluation of drug-like compounds

In Sci Rep. Volume 14(1), Apr
.

Beneficial Effect of Metformin on the Five-Year Survival in about 40,000 Patients with Head and Neck Cancer

In Cancers (Basel), Feb
.

Withdrawn 2.0-update on withdrawn drugs with pharmacovigilance data

In Nucleic Acids Res., Jan
.

2023

Comparison of the risk of hospital admission, need for ventilation, sepsis, pneumonitis and death among the recent monkeypox outbreak and historical outbreaks
, , , , , , and
In BMC Infect Dis Volume 23, 610, Sep
.

The Impact of Drug-Drug Interactions on the Toxicity Profile of Combined Treatment with BRAF and MEK Inhibitors in Patients with BRAF-Mutated Metastatic Melanoma
, , , , , , , , , , , , , and
In Cancers (Basel) Volume 15, Sep
.

Machine Learning and Pharmacogenomics at the Time of Precision Psychiatry
, , , , , , , , , , , and
In Curr Neuropharmacol, Aug
.

Using real-world evidence data and digital monitoring to analyze the hepatotoxic profiles of biologics across more than two million patients
, and
In Sci Rep Volume 13, 10878, Jul
.

DRD2, DRD3, and HTR2A Single-Nucleotide Polymorphisms Involvement in High Treatment Resistance to Atypical Antipsychotic Drugs
, , , , , , , , , , , , , , , and
In Biomedicines Volume 11, Jul
.

Data-driven analysis of chemicals, proteins and pathways associated with peanut allergy: from molecular networking to biological interpretation
, , , , , , and
In Food Science and Human Wellness, 10.26599/FSHW.2022.9250111, June
.

Statin Medication Improves Five-Year Survival Rates in Patients with Head and Neck Cancer: A Retrospective Case-Control Study of about 100,000 Patients
, , , and
In Cancers (Basel) Volume 15, Jun
.

Betulin and Its Derivatives Reduce Inflammation and COX-2 Activity in Macrophages
, , , , , , , , , , , , and
In Inflammation Volume 46, 573–583, Apr
.

Antibiotics Significantly Decrease the Survival of Head and Neck Carcinoma Patients with Immunotherapy: A Real-World Analysis of More Than 3000 Cases
, , , and
In Cancers (Basel) Volume 15, Apr
.

Real-world evidence for beneficial effects of dipyrone in 4,278 patients with pulmonary hypertension - Analysis of the risk of ventilation, hospitalization, and agranulocytosis
, , , , , and
In Eur J Pharmacol Volume 943, 175567, Mar
.

Increased incidence of adult-onset Still's disease in association with COVID-19 vaccination and SARS-CoV-2 infection
, , , , , and
In Orphanet J Rare Dis Volume 18, 50, Mar
.

Cystic fibrosis transmembrane conductance regulator modulators attenuate platelet activation and aggregation in blood of healthy donors and COVID-19 patients
, , , , , , , , , , , , , , , , , , , , , , , , , , , , and
In Eur Respir J Volume 61, Mar
.

SuperNatural 3.0-a database of natural products and natural product-based derivatives
, , , , , and
In Nucleic Acids Res Volume 51, D654-D659, Jan
.

Dupilumab Use Is Associated With Protection From Coronavirus Disease 2019 Mortality: A Retrospective Analysis
, , , , and
In Clin Infect Dis Volume 76, 148–151, Jan
.

Worse prognosis in females with new onset of depression after oral cancer diagnosis: a retrospective case-control study
, , , , , and
In Front Oncol Volume 13, 1248926 .

Editorial: Is it time to stick it to PFAS?
and
In Front Toxicol Volume 5, 1240563 .

A retrospective case-control study for the comparison of 5-year survival rates: the role of adjuvant and neoadjuvant chemotherapy in craniofacial bone sarcoma in adults
, , , , , and
In Ther Adv Med Oncol Volume 15, 17588359221148023 .

2022

Analysis of the Risk of Oral Squamous Cell Carcinoma in Patients with and without Recurrent Aphthous Stomatitis: A Retrospective Evaluation of Real-World Data of about 150,000 Patients
, , , , , and
In Cancers (Basel) Volume 14, Dec
.

An interdisciplinary approach to characterize peanut-allergic patients-First data from the FOOD@ consortium
, , , , , , , , , , , , , , , , , , , , , , , , , , , , , and
In Clin Transl Allergy Volume 12, e12197, Oct
.

Underutilized legumes, Cajanus cajan and Glycine max may bring about antisickling effect in sickle cell disease by modulation of redox homeostasis in sickled erythrocytes and alteration of its functional chemistry
, , , , , , , , , and
In J Food Biochem Volume 46, e14322, Sep
.

models ProTox-II for investigating the toxicity of chemicals used mainly in cosmetic products
and
In Toxicol Mech Methods Volume 32, 542–548, Sep
.

SuperPred 3.0: drug classification and target prediction-a machine learning approach
, , and
In Nucleic Acids Res Volume 50, W726-W731, Jul
, IF: 16.971.

Comparison of five-year survival rates among patients with oral squamous cell carcinoma with and without association with syphilis: a retrospective case-control study

In BMC Cancer Volume 22(1), Apr
, IF: 4.4.

Non-psychotropic cannabinoids as inhibitors of TET1 protein

In Bioorg Chem Volume 124:105793, Apr
, IF: 5.275.

Real-world evidence from over one-million COVID-19 vaccinations is consistent with reactivation of the varicella-zoster virus

In J Eur Acad Dermatol Venereol, Apr
, IF: 2.57.

The druggability of bitter taste receptors for the treatment of neurodegenerative disorders

In Biochem Pharmacol Volume 197, Mar
, IF: 5.29.

A Comparative Analysis of COVID-19 Vaccines Based on over 580,000 Cases from the Vaccination Adverse Event Reporting System

In Vaccines (Basel) Volume 10(3):408, Mar
, IF: 4.422.

Onset of Oral Lichenoid Lesions and Oral Lichen Planus Following COVID-19 Vaccination: A Retrospective Analysis of about 300,000 Vaccinated Patients

In Vaccines (Basel) Volume 10(3):480, Mar
, IF: 4.422.

Real-world evidence for preventive effects of statins on cancer incidence: A trans-Atlantic analysis

In Clin Transl Med Volume 12(2), Feb
, IF: 11.492.

Coalescent angiogenesis-evidence for a novel concept of vascular network maturation
, , , , , , and
In Angiogenesis Volume 25, 35–45, Feb
.

Pharmacogenomics-Guided Pharmacotherapy in Patients with Major Depressive Disorder or Bipolar Disorder Affected by Treatment-Resistant Depressive Episodes: A Long-Term Follow-Up Study.

In Journal of Personalized Medicine Volume 12(2):316, Feb
, IF: 4.945.

The risk of oral squamous cell carcinoma in patients with and without somatoform disorders including bruxism: A retrospective evaluation of 309,278 individuals
, , , , , , and
In Front Oncol Volume 12, 1080492 .

Prescription Advice Based on Data of Drug-Drug-Gene Interaction of Patients with Polypharmacy
, , , , , , and
In Pharmgenomics Pers Med Volume 15, 765–773 .

Comprehensive Assessment of Indian Variations in the Druggable Kinome Landscape Highlights Distinct Insights at the Sequence, Structure and Pharmacogenomic Stratum
, , , , , , , , , , , , , and
In Front Pharmacol Volume 13, 858345 .

2021

Man vs. machine: comparison of pharmacogenetic expert counselling with a clinical medication support system in a study with 200 genotyped patients

In Eur J Clin Pharmacol, Dec
, IF: 2.21.

Translational suppression of SARS-COV-2 ORF8 protein mRNA as a Viable therapeutic target against COVID-19: Computational studies on potential roles of isolated compounds from Clerodendrum volubile leaves

In Comput Biol Med Volume 139, Dec
, IF: 4.589.

SuperTCM: A biocultural database combining biological pathways and historical linguistic data of Chinese Materia Medica for drug development

In Biomed Pharmacother Volume 144, Dec
, IF: 6.529.

Prediction of oral squamous cell carcinoma based on machine learning of breath samples: a prospective controlled study

In BMC Oral Health Volume 21(1), Oct
, IF: 2.74.

IL-13 is a driver of COVID-19 severity

In JCI Insight Volume 6(15), Aug
, IF: 8.315.

Individualized Drugs' Selection by Evaluation of Drug Properties, Pharmacogenomics and Clinical Parameters: Performance of a Bioinformatic Tool Compared to a Clinically Established Counselling Process

In Pharmgenomics Pers Med Volume 14, Aug
, IF: 3.88.

A Birds-Eye (Re)View of Acid-Suppression Drugs, COVID-19, and the Highly Variable Literature

In Front Pharmacol Volume 12, Aug
, IF: 4.4.

Reynoutria Rhizomes as a Natural Source of SARS-CoV-2 Mpro Inhibitors-Molecular Docking and In Vitro Study

In Pharmaceuticals (Basel) Volume 14(8), Jul
, IF: 5.68.

Real-world evidence for improved outcomes with histamine antagonists and aspirin in 22,560 COVID-19 patients

In Signal Transduct Target Ther Volume 6(1), Jul
, IF: 18.187.

L-leucine stimulation of glucose uptake and utilization involves modulation of glucose - lipid metabolic switch and improved bioenergetic homeostasis in isolated rat psoas muscle ex vivo

In Amino Acids Volume 53(7), Jul
, IF: 3.23.

VirtualTaste: a web server for the prediction of organoleptic properties of chemical compounds

In Nucleic Acids Res Volume 49(W1), Jul
, IF: 16.971.

Sensitive to Infection but Strong in Defense-Female Sex and the Power of Oestradiol in the COVID-19 Pandemic

In Front Glob Womens Health Volume 11;2, May
, IF: .

Evaluation of Drug-Drug Interactions in EGFR-Mutated Non-Small-Cell Lung Cancer Patients during Treatment with Tyrosine-Kinase Inhibitors

In J Pers Med Volume 11(5), May
, IF: 4.45.

Voronoia 4-ever

In Nucleic Acids Res Volume 49(W1), May
, IF: 16.971.

Allosteric Modulation of the CB1 Cannabinoid Receptor by Cannabidiol-A Molecular Modeling Study of the N-Terminal Domain and the Allosteric-Orthosteric Coupling

In Molecules Volume 26(9), Apr
, IF: 4.411.

Oxidative testicular injury: effect of L-leucine on redox, cholinergic and purinergic dysfunctions, and dysregulated metabolic pathways

In Amino Acids Volume 53(3), Mar
, IF: 3.23.

IL-13 is a driver of COVID-19 severity

In medRxiv, Mar
, IF: .

Oestrogen-mediated upregulation of the Mas receptor contributes to sex differences in acute lung injury and lung vascular barrier regulation

In Eur Respir J Volume 57(1), Jan
, IF: 16.67.

PROMISCUOUS 2.0: a resource for drug-repositioning

In Nucleic Acids Res Volume 49(D1), Jan
, IF: 16.971.

Comparison of Computerized Prescription Support Systems in COVID-19 Patients: INTERCheck and Drug-PIN

In SN Compr Clin Med Volume 4(1),
, IF: .

A minigene DNA vaccine encoding peptide epitopes derived from Galectin-1 has protective antitumoral effects in a model of neuroblastoma

In Cancer Lett Volume 509,
, IF: 8.679.

2020

Computational prediction of potential inhibitors of the main protease of SARS-CoV-2
and
In Molecular Studies of COVID-19 studies, Dec
, IF: 3.994.

Norditerpenoids with Selective Anti-Cholinesterase Activity from the Roots of Perovskia atriplicifolia Benth

In International Journal of Molecular Sciences Volume 21, Jun
, IF: 5.542.

SuperCYPsPred- A Web Server for the Prediction of Cytochrome Activity
and
In Nucleic Acids Research Volume NAR-web-server issue 2020, Mar
, IF: 16.971.

Isolation, Characterisation and In Silico Toxicity Evaluations of Thiocarbamates, Isothiocyanates, Nitrile, Glucosinolate and Lipids from Moringa oleifera Lam. Seed

In Journal of the Turkish Chemical Society Section A: Chemistry Volume 7, Jan
, IF: 0.83.

2018

mVOC 2.0: a database of microbial volatiles
, , , , and
In Nucleic Acids Res. Volume 46, D1261-D1265, Jan
, IF: 10.162.

SuperDRUG2: a one stop resource for approved/marketed drugs
, , , , , , and
In Nucleic Acids Res. Volume 46, D1137-D1143, Jan
, IF: 10.162.

2017

Volatile Organic Compounds in the Breath of Oral Squamous Cell Carcinoma Patients: A Pilot Study
, , , , and
In Otolaryngol Head Neck Surg Volume 157, 981–987, Dec
, IF: 2.021.

The target landscape of clinical kinase drugs
, , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , and
In Science Volume 358, Dec
, IF: 37.205.

Computational prediction of immune cell cytotoxicity
, , , , , and
In Food Chem. Toxicol. Volume 107, 150–166, Sep
, IF: 3.584.

Drugs as habitable planets in the space of dark chemical matter
and
In Drug Discov. Today, Jul
, IF: 6.369.

Statin and rottlerin small-molecule inhibitors restrict colon cancer progression and metastasis via MACC1
, , , , , , , , , , , , and
In PLoS Biol. Volume 15, e2000784, Jun
, IF: 8.668.

Volatile organic compounds in the breath of oral candidiasis patients: a pilot study
, , , , , , and
In Clin Oral Investig, Jun
, IF: 2.207.

Bax/Bak-independent mitochondrial depolarization and reactive oxygen species induction by sorafenib overcome resistance to apoptosis in renal cell carcinoma
, , , , , and
In J. Biol. Chem. Volume 292, 6478–6492, April
, IF: 4.573.

CardioScape mapping the cardiovascular funding landscape in Europe
, , , , , , , , and
In Eur. Heart J., Apr
, IF: 20.212.

Anti-diabetic effect of the ethyl acetate fraction of Clerodendrum volubile: protocatechuic acid suppresses phagocytic oxidative burst and modulates inflammatory cytokines
, , , , , , , , and
In Biomed. Pharmacother. Volume 86, 307–315, Feb
, IF: 2.326.

2016

TRPC6 G757D Loss-of-Function Mutation Associates with FSGS
, , , , , , , , , , , , , and
In J. Am. Soc. Nephrol. Volume 27, 2771–2783, Sep
, IF: 9.343.

Adjuvant antifungal therapy using tissue tolerable plasma on oral mucosa and removable dentures in oral candidiasis patients: a randomised double-blinded split-mouth pilot study
, , , , , , and
In Mycoses Volume 59, 467–475, Jul
, IF: 2.239.

SL2: an interactive webtool for modeling of missing segments in proteins
, , , , and
In Nucleic Acids Res. Volume 44, W390–394, Jul
, IF: 9.202.

Chemical Proteomics Reveals Ferrochelatase as a Common Off-target of Kinase Inhibitors
, , , , , , , , , , , , and
In ACS Chem. Biol. Volume 11, 1245–1254, May
, IF: 5.331.

Inhibition of DNA-Topoisomerase I by Acylated Triterpene Saponins from Pittosporum angustifolium Lodd
, , and
In Nat Prod Bioprospect Volume 6, 141–147, Apr
.

Identification of signature volatiles to discriminate Candida albicans, glabrata, krusei and tropicalis using gas chromatography and mass spectrometry
, , , , , , , and
In Mycoses Volume 59, 117–126, Feb
, IF: 2.24.

Detection of signature volatiles for cariogenic microorganisms
, , , , and
In Eur. J. Clin. Microbiol. Infect. Dis. Volume 35, 235–244, Feb
, IF: 2.67.

CancerResource–updated database of cancer-relevant proteins, mutations and interacting drugs
, , , and
In Nucleic Acids Res. Volume 44, D932–937, Jan
, IF: 9.11.

WITHDRAWN–a resource for withdrawn and discontinued drugs
, , , , and
In Nucleic Acids Res. Volume 44, D1080–1086, Jan
, IF: 9.11.

Computational methods for prediction of in vitro effects of new chemical structures
, , and
In J Cheminform Volume 8, 51,
, IF: 3.949.

2015

DBEndo: a web-based endodontic case management tool
, , , , and
In BMC Res Notes Volume 8, 685, Nov
.

2D and 3D similarity landscape analysis identifies PARP as a novel off-target for the drug Vatalanib
, , , , , and
In BMC Bioinformatics Volume 16, 308, Sep
, IF: 2.58.

Super Natural II–a database of natural products
, , , , and
In Nucleic Acids Res. Volume 43, D935–939, Jan
, IF: 8.81.

Acyclovir Has Low but Detectable Influence on HLA-B*57:01 Specificity without Inducing Hypersensitivity
, , , , , , , , , , , , , , and
In PLoS ONE Volume 10, e0124878,
.

Personalized Cancer Therapy Considering Cytochrome P450 Variability
, , and
In Adv. Pharmacol. Volume 74, 113–130,
.

2014

ProTox: a web server for the in silico prediction of rodent oral toxicity
, , , and
In Nucleic Acids Res. Volume 42, W53–58, Jul
, IF: 8.026.

SuperPred: update on drug classification and target prediction
, , , , , , and
In Nucleic Acids Res. Volume 42, 26–31, Jul
, IF: 8.026.

The Transformer database: biotransformation of xenobiotics
, , , , and
In Nucleic Acids Res. Volume 42, D1113–1117, Jan
, IF: 8.026.

mVOC: a database of microbial volatiles
, , , and
In Nucleic Acids Res. Volume 42, D744–748, Jan
, IF: 8.026.

SuperPain–a resource on pain-relieving compounds targeting ion channels
, and
In Nucleic Acids Res. Volume 42, D1107–1112, Jan
, IF: 8.026.

GenderMedDB: an interactive database of sex and gender-specific medical literature
, , , and
In Biol Sex Differ Volume 5, 7,
, IF: 3.237.

2013

Residues of a proposed gate region in type I ATP-binding cassette import systems are crucial for function as revealed by mutational analysis
, , , , , , , and
In Biochim. Biophys. Acta Volume 1828, 2164–2172, Sep
, IF: 3.99.

Targeted therapy of the XIAP/proteasome pathway overcomes TRAIL-resistance in carcinoma by switching apoptosis signaling to a Bax/Bak-independent 'type I' mode
, , , , , , , and
In Cell Death Dis Volume 4, e643, May
, IF: 5.333.

VaccImm: simulating peptide vaccination in cancer therapy
, , and
In BMC Bioinformatics Volume 14, 127, Apr
, IF: 3.02.

SynSysNet: integration of experimental data on synaptic protein-protein interactions with drug-target relations
, , , , , , , , , , , , , and
In Nucleic Acids Res. Volume 41, D834–840, Jan
, IF: 8.026.

Mapping discontinuous protein-binding sites via structure-based peptide libraries: combining in silico and in vitro approaches
, , , , , , , , and
In J. Mol. Recognit. Volume 26, 23–31, Jan
, IF: 3.31.

A new algorithm for integrated analysis of miRNA-mRNA interactions based on individual classification reveals insights into bladder cancer
, , , , and
In PLoS ONE Volume 8, e64543,
, IF: 4.411.

Polymorphic cytochrome P450 enzymes (CYPs) and their role in personalized therapy
, , , , and
In PLoS ONE Volume 8, e82562,
, IF: 4.411.

2012

Binding sites in membrane proteins–diversity, druggability and prospects
, , , , and
In Eur. J. Cell Biol. Volume 91, 326–339, Apr
, IF: 3.63.

SuperTarget goes quantitative: update on drug-target interactions
, , , , , , , and
In Nucleic Acids Res. Volume 40, D1113–1117, Jan
, IF: 7.836.

Drug cocktail optimization in chemotherapy of cancer
, , , , , , and
In PLoS ONE Volume 7, e51020,
, IF: 4.411.

2011

SDM–a server for predicting effects of mutations on protein stability and malfunction
, and
In Nucleic Acids Res. Volume 39, W215–222, Jul
, IF: 7.836.

Cobweb: a Java applet for network exploration and visualisation
, and
In Bioinformatics Volume 27, 1725–1726, Jun
, IF: 4.926.

CancerResource: a comprehensive database of cancer-relevant proteins and compound interactions supported by experimental knowledge
, , , , , , , and
In Nucleic Acids Res. Volume 39, D960–967, Jan
.

PROMISCUOUS: a database for network-based drug-repositioning
, , , , and
In Nucleic Acids Res. Volume 39, D1060–1066, Jan
, IF: 7.836.

FragmentStore–a comprehensive database of fragments linking metabolites, toxic molecules and drugs
, , , , , and
In Nucleic Acids Res. Volume 39, D1049–1054, Jan
.

SuperSweet–a resource on natural and artificial sweetening agents
, , , , and
In Nucleic Acids Res. Volume 39, D377–382, Jan
.

Development of immune-specific interaction potentials and their application in the multi-agent-system VaccImm
, , , , and
In PLoS ONE Volume 6, e23257,
.

2010

Analysis of sex and gender-specific research reveals a common increase in publications and marked differences between disciplines
, , , and
In BMC Med Volume 8, 70, Nov
, IF: 3.99.

Novel compounds with antiangiogenic and antiproliferative potency for growth control of testicular germ cell tumours
, , , , , , , and
In Br. J. Cancer Volume 103, 18–28, Jun
, IF: 4.346.

Endogenous Bak inhibitors Mcl-1 and Bcl-xL: differential impact on TRAIL resistance in Bax-deficient carcinoma
, , , , , , , , , and
In J. Cell Biol. Volume 188, 851–862, Mar
, IF: 9.12.

Enzymatic, expression and structural divergences among carboxyl O-methyltransferases after gene duplication and speciation in Nicotiana
, , , , and
In Plant Mol. Biol. Volume 72, 311–330, Feb
, IF: 3.541.

Structural features and evolution of protein-protein interactions
, and
In Genome Inform Volume 22, 1–10, Jan
, IF: 3.609.

SuperCYP: a comprehensive database on Cytochrome P450 enzymes including a tool for analysis of CYP-drug interactions
, , , , , , , , and
In Nucleic Acids Res. Volume 38, D237–243, Jan
, IF: 6.954.

Theoretical modeling techniques and their impact on tumor immunology
, and
In Clin. Dev. Immunol. Volume 2010, 271794,
, IF: 3.0.

DNA vaccination: using the patient's immune system to overcome cancer
, , , and
In Clin. Dev. Immunol. Volume 2010, 169484,
, IF: 3.0.

2009

Computer-assisted identification of small-molecule Bcl-2 modulators
, , , and
In Comput Biol Chem Volume 33, 451–456, Dec
, IF: 1.837.

Inhibiting the inhibitors: retro-inverso Smac peptides
, , , , and
In Peptides Volume 30, 2374–2379, Dec
, IF: 2.565.

Cellular fingerprints: a novel approach using large-scale cancer cell line data for the identification of potential anticancer agents
, , , and
In Chem Biol Drug Des Volume 74, 439–448, Nov
.

SuperLooper–a prediction server for the modeling of loops in globular and membrane proteins
, , , , , and
In Nucleic Acids Res. Volume 37, W571–574, Jul
, IF: 6.954.

Survivin minigene DNA vaccination is effective against neuroblastoma
, , , , , , , , , , , , , and
In Int. J. Cancer Volume 125, 104–114, Jul
, IF: 4.555.

SuperSite: dictionary of metabolite and drug binding sites in proteins
, , , , and
In Nucleic Acids Res. Volume 37, 195–200, Jan
, IF: 6.954.

SuperToxic: a comprehensive database of toxic compounds
, , , , , , , and
In Nucleic Acids Res. Volume 37, D295–299, Jan
, IF: 6.954.

Voronoia: analyzing packing in protein structures
, , , and
In Nucleic Acids Res. Volume 37, D393–395, Jan
, IF: 6.954.

SuperScent–a database of flavors and scents
, , , , , , , , , , and
In Nucleic Acids Res. Volume 37, D291–294, Jan
, IF: 6.954.

JAIL: a structure-based interface library for macromolecules
, , and
In Nucleic Acids Res. Volume 37, D338–341, Jan
, IF: 6.954.

2008

Notch inhibition blocks multiple myeloma cell-induced osteoclast activation
, , , , , , , and
In Leukemia Volume 22, 2273–2277, Dec
, IF: 6.924.

SuperPred: drug classification and target prediction
, , , and
In Nucleic Acids Res. Volume 36, W55–59, Jul
, IF: 6.954.

A rationally designed tyrosine hydroxylase DNA vaccine induces specific antineuroblastoma immunity
, , , , , , and
In Mol. Cancer Ther. Volume 7, 2241–2251, Jul
, IF: 5.137.

Superimpose: a 3D structural superposition server
, , , , , , , , , , , and
In Nucleic Acids Res. Volume 36, 47–54, Jul
, IF: 6.954.

Hydrogen-bonding and packing features of membrane proteins: functional implications
, , , , and
In Biophys. J. Volume 94, 1945–1953, Mar
, IF: 4.757.

SuperTarget and Matador: resources for exploring drug-target relationships
, , , , , , , , , , , , , , and
In Nucleic Acids Res. Volume 36, D919–922, Jan
, IF: 6.954.

Suffix techniques as a rapid method for RNA substructure search
, , and
In Genome Inform Volume 20, 183–198,
.

Toxicity versus potency: elucidation of toxicity properties discriminating between toxins, drugs, and natural compounds
, , , , and
In Genome Inform Volume 20, 231–242,
.

Comparative VEGF receptor tyrosine kinase modeling for the development of highly specific inhibitors of tumor angiogenesis
, , , and
In Genome Inform Volume 20, 243–251,
.

2007

Docking without docking: ISEARCH–prediction of interactions using known interfaces
, , , and
In Proteins Volume 69, 839–844, Dec
, IF: 3.73.

SuperHapten: a comprehensive database for small immunogenic compounds
, , , and
In Nucleic Acids Res. Volume 35, D906–910, Jan
.

A structural genomics approach to the regulation of apoptosis: chimp vs. human
, , and
In Genome Inform Volume 18, 22–34,
.

2006

Characterization of GD2 peptide mimotope DNA vaccines effective against spontaneous neuroblastoma metastases
, , , , , , , , , , , , , , and
In Cancer Res. Volume 66, 10567–10575, Nov
, IF: 7.616.

Legionella pneumophila induces IFNbeta in lung epithelial cells via IPS-1 and IRF3, which also control bacterial replication
, , , , , , , , , , , , and
In J. Biol. Chem. Volume 281, 36173–36179, Nov
.

Photoactivation of an inhibitor of the 12/15-lipoxygenase pathway
, , , , , , and
In Chembiochem Volume 7, 1089–1095, Jul
, IF: 3.94.

Analysis and prediction of helix-helix interactions in membrane channels and transporters
, , and
In Proteins Volume 64, 253–262, Jul
, IF: 4.684.

Representation of target-bound drugs by computed conformers: implications for conformational libraries
, , , and
In BMC Bioinformatics Volume 7, 293, Jun
, IF: 5.423.

Natural products: sources and databases
, , and
In Nat Prod Rep Volume 23, 347–356, Jun
, IF: 7.89.

SuperMimic–fitting peptide mimetics into protein structures
, , and
In BMC Bioinformatics Volume 7, 11, Jan
, IF: 5.423.

SuperNatural: a searchable database of available natural compounds
, , and
In Nucleic Acids Res. Volume 34, D678–683, Jan
, IF: 7.552.

Design and biological evaluation of photo-switchable inhibitors
, , , , , and
In Genome Inform Volume 17, 141–151,
.

2005

SUPERFICIAL–surface mapping of proteins via structure-based peptide library design
, and
In BMC Bioinformatics Volume 6, 223, Sep
, IF: 5.423.

Novel curcumin- and emodin-related compounds identified by in silico 2D/3D conformer screening induce apoptosis in tumor cells
, , , , and
In BMC Cancer Volume 5, 97, Aug
, IF: 2.293.

SuperDrug: a conformational drug database
, , , and
In Bioinformatics Volume 21, 1751–1753, May
, IF: 6.701.

SuperLigands - a database of ligand structures derived from the Protein Data Bank
, , and
In BMC Bioinformatics Volume 6, 122, May
, IF: 5.423.

In silico screening of drug databases for TSE inhibitors
, and
In BioSystems Volume 80, 117–122, May
, IF: 1.144.

Columba: an integrated database of proteins, structures, and annotations
, , , , , , and
In BMC Bioinformatics Volume 6, 81, Mar
, IF: 5.423.

Molecular packing and packing defects in helical membrane proteins
, , , and
In Biophys. J. Volume 88, 1970–1977, Mar
, IF: 4.463.

Conservation of cis prolyl bonds in proteins during evolution
, , , and
In Proteins Volume 58, 589–595, Feb
, IF: 5.239.

2004

Structural features of transmembrane helices
, and
In FEBS Lett. Volume 559, 145–151, Feb
.

Comparison of 2D similarity and 3D superposition. Application to searching a conformational drug database
, , and
In J Chem Inf Comput Sci Volume 44, 1816–1822,
.

2003

Accelerating screening of 3D protein data with a graph theoretical approach
, , , , , , and
In Bioinformatics Volume 19, 2442–2447, Dec
, IF: 6.701.

Loops In Proteins (LIP)–a comprehensive loop database for homology modelling
, and
In Protein Eng. Volume 16, 979–985, Dec
, IF: 2.065.

Inhomogeneous molecular density: reference packing densities and distribution of cavities within proteins
, , and
In Bioinformatics Volume 19, 2112–2121, Nov
.

Inverse sequence similarity of proteins does not imply structural similarity
, , and
In FEBS Lett. Volume 545, 105–109, Jun
, IF: 3.609.

A comprehensive view on proteasomal sequences: implications for the evolution of the proteasome
, , , , , and
In J. Mol. Biol. Volume 326, 1437–1448, Mar
, IF: 5.239.

2002

The RTP site shared by the HIV-1 Tat protein and the 11S regulator subunit alpha is crucial for their effects on proteasome function including antigen processing
, , , , , , , and
In J. Mol. Biol. Volume 323, 771–782, Nov
.

2001

Matching organic libraries with protein-substructures
, , , , and
In J. Comput. Aided Mol. Des. Volume 15, 811–817, Sep
, IF: 3.194.

2000

Conservation of substructures in proteins: interfaces of secondary structural elements in proteasomal subunits
, , , and
In J. Mol. Biol. Volume 299, 1147–1154, Jun
.

1999

Spare parts for helix-helix interaction
, and
In Protein Eng. Volume 12, 825–832, Oct
, IF: 3.209.

Homonyms and synonyms in the Dictionary of Interfaces in Proteins (DIP)
, and
In Bioinformatics Volume 15, 832–836, Oct
, IF: 6.701.

Sequence information within proteasomal prosequences mediates efficient integration of beta-subunits into the 20 S proteasome complex
, , , , and
In J. Mol. Biol. Volume 288, 117–128, Apr
, IF: 5.239.

1998

Dictionary of interfaces in proteins (DIP). Data bank of complementary molecular surface patches
, and
In J. Mol. Biol. Volume 280, 535–550, Jul
, IF: 6.701.

1997

Inverse sequence similarity in proteins and its relation to the three-dimensional fold
, , and
In FEBS Lett. Volume 414, 425–429, Sep
.

1991

On alpha-helices terminated by glycine. 2. Recognition by sequence patterns
and
In Biochem. Biophys. Res. Commun. Volume 180, 666–672, Oct
, IF: 2.836.

On alpha-helices terminated by glycine. 1. Identification of common structural features
and
In Biochem. Biophys. Res. Commun. Volume 180, 660–665, Oct
.

Occurrence of bifurcated three-center hydrogen bonds in proteins
, and
In FEBS Lett. Volume 288, 192–196, Aug
, IF: 3.609.

1990

Prediction of prolyl residues in cis-conformation in protein structures on the basis of the amino acid sequence
and
In FEBS Lett. Volume 277, 159–163, Dec
, IF: 3.609.